rs27557446 SNP Detail

Summary

• ID
  rs27557446
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130662323 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGGGTGCG TTTGGTTAAC
  AGCTACCGGC TTGATCTGTT TGGCCAGGCA GCAGCAGGAA GAGAATCTGG CCAAGCAATA
  GTTCCTGGTG TCAGTTTATA CTCAGCTGTC AGACGACAGG ATGGGTCATG ATTGTGGTGC
  CCGTTTGCCA CCTCCAGTAC CCCAAAAGTG TACAAACAAA ACAATTCCTT CAAATAGCTT
  R
  CTTAAATAGC GATTCAGCCA ACTGCTGTCA TTAGGAATTA TGATAAAATC TAGTAAGAAA
  CTGAGGAGAA AAAGAAATAG AAACGGAGCC CCTCCCACCA CTCACTGCAG TGCTCACCAT
  GGAGCCCCTC CCACCACTCA TTGCAGTGCT CACCATGGAG CCCCTCCCAC CACTCACTGC
  AGTGCTCACC ATGGAGCCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37752868	NES09161753	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27557446					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37752868	NES09161753	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130662323 () rs orientation: forward

Symbol	Name	Function Class
Laptm5	lysosomal-associated protein transmembrane 5	within coordinates
Tssr39332	transcription start site region 39332	544 bp downstream
Tssr39333	transcription start site region 39333	529 bp downstream
Tssr39334	transcription start site region 39334	480 bp downstream
Tssr39335	transcription start site region 39335	462 bp downstream
Tssr39336	transcription start site region 39336	446 bp downstream
Tssr39337	transcription start site region 39337	419 bp downstream
Tssr39338	transcription start site region 39338	386 bp downstream
Tssr39339	transcription start site region 39339	339 bp downstream
Tssr39340	transcription start site region 39340	291 bp downstream
Tssr39341	transcription start site region 39341	273 bp downstream
Tssr39342	transcription start site region 39342	187 bp downstream
Tssr39343	transcription start site region 39343	166 bp downstream
Tssr39344	transcription start site region 39344	105 bp downstream
Tssr39345	transcription start site region 39345	68 bp downstream
Tssr39346	transcription start site region 39346	53 bp downstream
Tssr39347	transcription start site region 39347	480 bp upstream
Tssr39348	transcription start site region 39348	991 bp upstream
Tssr39349	transcription start site region 39349	1036 bp upstream
Tssr43605	transcription start site region 43605	439 bp upstream
Tssr43606	transcription start site region 43606	180 bp upstream
Tssr43607	transcription start site region 43607	60 bp downstream
Tssr43608	transcription start site region 43608	1124 bp downstream