rs27557452 SNP Detail

Summary

• ID
  rs27557452
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130661903 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCCTTGTA CCTCAGGTTA
  GACCAATGGG TTCTTGATGG TGCTCAGCAA TCCTTTCTGT CTCTCCCAGG TGGCTCTGCC
  GTCCTACGAG GAAGCCTTGT CTCTGCCCCC TAAGACTCCA GAGGGGGACC CTGCACCACC
  CCCATACTCA GAAGTGTGAT CCCCACCAGG CCTTTAGCCC TTGGGCTGGG AGAGGCAGAA
  Y
  TTCCTCCTCC TGCTTCTTCA CTTTGGTGGT TGCTGTGGCC TGCCTGCTAC AGGACAATCT
  GCTTGTGCCC CCCCTCACTG TCCTCTCCTC TCGGGGACCC CTCACTCACA ACTGAGTCAC
  CCTGGGCTCA GTGACCCTTT GCGGCTCAGG ATACTCAGCC TAGCAGCCCG TCTCGTCTCC
  ATCAGCAGTG ACACTTGTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37752876	NES09161745	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27557452					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37752876	NES09161745	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130661903 () rs orientation: forward

Symbol	Name	Function Class
Laptm5	lysosomal-associated protein transmembrane 5	within coordinates
Tssr39330	transcription start site region 39330	1980 bp downstream
Tssr39331	transcription start site region 39331	1948 bp downstream
Tssr39332	transcription start site region 39332	124 bp downstream
Tssr39333	transcription start site region 39333	109 bp downstream
Tssr39334	transcription start site region 39334	60 bp downstream
Tssr39335	transcription start site region 39335	42 bp downstream
Tssr39336	transcription start site region 39336	26 bp downstream
Tssr39337	transcription start site region 39337	within coordinates
Tssr39338	transcription start site region 39338	23 bp upstream
Tssr39339	transcription start site region 39339	47 bp upstream
Tssr39340	transcription start site region 39340	124 bp upstream
Tssr39341	transcription start site region 39341	140 bp upstream
Tssr39342	transcription start site region 39342	222 bp upstream
Tssr39343	transcription start site region 39343	242 bp upstream
Tssr39344	transcription start site region 39344	302 bp upstream
Tssr39345	transcription start site region 39345	338 bp upstream
Tssr39346	transcription start site region 39346	354 bp upstream
Tssr39347	transcription start site region 39347	900 bp upstream
Tssr39348	transcription start site region 39348	1411 bp upstream
Tssr39349	transcription start site region 39349	1456 bp upstream
Tssr43605	transcription start site region 43605	19 bp upstream
Tssr43606	transcription start site region 43606	196 bp downstream
Tssr43607	transcription start site region 43607	480 bp downstream
Tssr43608	transcription start site region 43608	1544 bp downstream