rs27557453 SNP Detail

Summary

• ID
  rs27557453
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130661899 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             CTCAGAAGTG TGATCCCCAC CAGGCCTTTA GCCCTTGGGC TGGGAGAGGC
  R
  GAACTTCCTC CTCCTGCTTC TTCACTTTGG TGGTTGCTGT GGCCTGCCTG           
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37752877	NES09161744	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	G	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27557453					SNP	A	A	A	A	A	A	A	A	A	G	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37752877	NES09161744	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130661899 () rs orientation: forward

Symbol	Name	Function Class
Laptm5	lysosomal-associated protein transmembrane 5	within coordinates
Tssr39330	transcription start site region 39330	1976 bp downstream
Tssr39331	transcription start site region 39331	1944 bp downstream
Tssr39332	transcription start site region 39332	120 bp downstream
Tssr39333	transcription start site region 39333	105 bp downstream
Tssr39334	transcription start site region 39334	56 bp downstream
Tssr39335	transcription start site region 39335	38 bp downstream
Tssr39336	transcription start site region 39336	22 bp downstream
Tssr39337	transcription start site region 39337	within coordinates
Tssr39338	transcription start site region 39338	27 bp upstream
Tssr39339	transcription start site region 39339	51 bp upstream
Tssr39340	transcription start site region 39340	128 bp upstream
Tssr39341	transcription start site region 39341	144 bp upstream
Tssr39342	transcription start site region 39342	226 bp upstream
Tssr39343	transcription start site region 39343	246 bp upstream
Tssr39344	transcription start site region 39344	306 bp upstream
Tssr39345	transcription start site region 39345	342 bp upstream
Tssr39346	transcription start site region 39346	358 bp upstream
Tssr39347	transcription start site region 39347	904 bp upstream
Tssr39348	transcription start site region 39348	1415 bp upstream
Tssr39349	transcription start site region 39349	1460 bp upstream
Tssr43605	transcription start site region 43605	15 bp upstream
Tssr43606	transcription start site region 43606	200 bp downstream
Tssr43607	transcription start site region 43607	484 bp downstream
Tssr43608	transcription start site region 43608	1548 bp downstream