rs27557457 SNP Detail

Summary

• ID
  rs27557457
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130660867 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCCATCCAT CCATCCATCC
  TCCATCCATC CTCCATCCAT CATCCATCCA TCATCCATCC ATCCATCCAT CATCCATCCA
  TCCATCCATC CATCCATCCA TCCATCATCC ATCCATCCAT CATCCATCCA TCATCCATCC
  ATCATCCATC TATCCATCCA TCCATCCATC CATCCATCAT CTATCTACTC ACCATCCTTC
  Y
  ATCCCTCCTT CTTCCTTACT GCCTCTTGGT CCTTTAGTCT TGTACCCAAT CTTGGATGCC
  GCTTTTGTCT TAGAGGTGTG CACAGTCTAC AGTGAACCCA GTTGCTGAGA TGCGTTTACA
  CTTCTGTATG AAACACAGGG ACCTTGAACA TGGAGCTGGC ACACAAGTGA TTCTGGGAAT
  GCTTCCTGTG GGAGAGGACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37752881	NES09161781	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27557457					SNP	T	T	T	T	T	T	T	T	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37752881	NES09161781	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130660867 () rs orientation: forward

Symbol	Name	Function Class
Laptm5	lysosomal-associated protein transmembrane 5	within coordinates
Tssr1315	transcription start site region 1315	1424 bp downstream
Tssr39317	transcription start site region 39317	1531 bp downstream
Tssr39318	transcription start site region 39318	1412 bp downstream
Tssr39319	transcription start site region 39319	1379 bp downstream
Tssr39320	transcription start site region 39320	1317 bp downstream
Tssr39321	transcription start site region 39321	1298 bp downstream
Tssr39322	transcription start site region 39322	1245 bp downstream
Tssr39323	transcription start site region 39323	1231 bp downstream
Tssr39324	transcription start site region 39324	1200 bp downstream
Tssr39325	transcription start site region 39325	1186 bp downstream
Tssr39326	transcription start site region 39326	1165 bp downstream
Tssr39327	transcription start site region 39327	1146 bp downstream
Tssr39328	transcription start site region 39328	1120 bp downstream
Tssr39329	transcription start site region 39329	1001 bp downstream
Tssr39330	transcription start site region 39330	944 bp downstream
Tssr39331	transcription start site region 39331	912 bp downstream
Tssr39332	transcription start site region 39332	901 bp upstream
Tssr39333	transcription start site region 39333	924 bp upstream
Tssr39334	transcription start site region 39334	952 bp upstream
Tssr39335	transcription start site region 39335	989 bp upstream
Tssr39336	transcription start site region 39336	1003 bp upstream
Tssr39337	transcription start site region 39337	1025 bp upstream
Tssr39338	transcription start site region 39338	1059 bp upstream
Tssr39339	transcription start site region 39339	1083 bp upstream
Tssr39340	transcription start site region 39340	1160 bp upstream
Tssr39341	transcription start site region 39341	1176 bp upstream
Tssr39342	transcription start site region 39342	1258 bp upstream
Tssr39343	transcription start site region 39343	1278 bp upstream
Tssr39344	transcription start site region 39344	1338 bp upstream
Tssr39345	transcription start site region 39345	1374 bp upstream
Tssr39346	transcription start site region 39346	1390 bp upstream
Tssr39347	transcription start site region 39347	1936 bp upstream
Tssr43605	transcription start site region 43605	987 bp downstream
Tssr43606	transcription start site region 43606	1232 bp downstream
Tssr43607	transcription start site region 43607	1516 bp downstream