rs27558271 SNP Detail

Summary

• ID
  rs27558271
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:128617874 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGGCCCGG GACCTGGAAA
  AGCAGGAGGA GCAGAGCGGA CCCTGCAGCT CTTTGGCCGT TGGTTGTGAA TGCTGCGCAT
  ATGTGGGCCA GGCTGATAGC AGAGGTGTCA GAGGGACTGA GATTTAATTA TGGCCAGAGG
  ACTGAAGAGT CTCCAAGAGA GAAGGAAATG CCTGAGAGGA AAGCAGGCAG GGGCCTCAGC
  R
  TGAGCTCTGC TTGCCAGAAG CATCTCTGAG GGCACTGTGT TCATCTCTGG GGTCTCCATC
  TGTCTCTCTG AGTGACCAGT GACTTCCCAC GGCCTGGGCT TCAGGGCACT CTGCAAGAGC
  ACTCCACCCT GGCGGGAGAG TCACAGTGGT ACCTCCGCCC TCCACCATCA CGAGCCACTT
  GCTGGCCTTC CTCTCAGCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37722103	NES09171804	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A		A	G	G	A		G
ss321306938	CHEV_4_128401325	CHEVERUD	SCREENING_POP	f	SNP									G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27558271					SNP	G	G	G	G	G	G	G	A	G	A	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37722103	NES09171804	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:128617874 () rs orientation: forward

Symbol	Name	Function Class
Gm33712	predicted gene, 33712	within coordinates
Phc2	polyhomeotic 2	within coordinates
Rr600014	regulatory region 600014	46 bp proximal
Tssr39071	transcription start site region 39071	1890 bp downstream