rs27558273 SNP Detail

Summary

• ID
  rs27558273
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:128617553 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCCCGATG ACTGGAAGGA
  AGTGGTGCCA GCGGAGAAGA GTGTGCCTGT GGCTCGGCCA GGCCCGTCCC CACACCAGCA
  AGCCATCATC CCTGCCATAC CCGGTGGCTT GCCTGGACCC AAGAGTCCCA ACATCCAGCA
  GTGCCCAGCT CACGGTATGG AGTGTTGGGG AAGGGAGGAA GTTGGCTTTG CCTGCCGCTT
  Y
  CTGGCATCTT TTTCTCGGTG TCCAGGAGGG GAGGTAAACT GCCTTAAACC TAACGAAGCA
  ACATGGCAGC TGCGTAGTTG GAAACAGAGA GGGGAAGTGA GGGCACGGGC CAGGGACAGA
  GGTGGCCCGG GACCTGGAAA AGCAGGAGGA GCAGAGCGGA CCCTGCAGCT CTTTGGCCGT
  TGGTTGTGAA TGCTGCGCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37722105	NES09171798	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T		C	C	T		C
ss321306935	CHEV_4_128401004	CHEVERUD	SCREENING_POP	f	SNP										C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27558273					SNP	C	C	C	C	C	C	C	C	T	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37722105	NES09171798	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:128617553 () rs orientation: forward

Symbol	Name	Function Class
Gm33712	predicted gene, 33712	within coordinates
Phc2	polyhomeotic 2	within coordinates
Rr600014	regulatory region 600014	367 bp proximal
Tssr39071	transcription start site region 39071	1569 bp downstream