rs27558277 SNP Detail

Summary

• ID
  rs27558277
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:128615542 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACACTGATC CCCAAGTTTC
  TCAATTCATC ACTCATTGTC CTCACAAGAC CGCGTCTTGC GGGCCTTCTG CACTCCATCT
  CCATGGGGGC CGGCCCCGGG CGAGCTTCAT TCTCCTCACG CTTCCTGCTA GCTCTTCTTT
  CTGCTCCTTC TCTATTCCTG TTGGCAACCT GCATTCCATG TGGGGCTATG ATGACAGCTA
  K
  AAACCTGCAA TGTGAAGAGG TGAAACTGAA GGAAGGCCAC GCCTCCCCTG ACTCAGTTTG
  AAGCCTTTGT GGTTGCAGAC AGACTCAGTC AGGTGCTTGG TAAATGTTAG CTTGCCCCCA
  TAGTCTGTCT GTCCTTATGT GGCTGTACAG ATCTGGTGTG AGTGTGCCAC TGTGGCCCTC
  TATGTCTGGC TGGCGTACCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37722109	NES09171869	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27558277					SNP	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37722109	NES09171869	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:128615542 () rs orientation: forward

Symbol	Name	Function Class
Gm33712	predicted gene, 33712	within coordinates
Phc2	polyhomeotic 2	within coordinates
Rr600012	regulatory region 600012	1155 bp distal
Rr600013	regulatory region 600013	302 bp distal
Tssr39071	transcription start site region 39071	432 bp upstream