rs27558281 SNP Detail

Summary

• ID
  rs27558281
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:128614443 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTT TCCTCTTCAA CCTTGTTTTT
  Y
  CACCTCATAA ATCCTGAAAT ACTTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37722113	NES09171963	PERLEGEN	MM_PANEL2	f	SNP	C			T	T	C	T		T	C	C		C	C	T	C		C
ss45577985	mCV25366958	ABI	CRAMUS_MOUSE	f	SNP	C	C	T					T	T
ss147432386	ENSMUSSNP3086005	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						T
ss321306920	CHEV_4_128397894	CHEVERUD	SCREENING_POP	f	SNP												C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27558281					SNP	C	C	T	T	T	C	T	T	T	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37722113	NES09171963	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:128614443 () rs orientation: forward

Symbol	Name	Function Class
Gm33712	predicted gene, 33712	725 bp downstream
Phc2	polyhomeotic 2	within coordinates
Rr600012	regulatory region 600012	56 bp distal
Rr600013	regulatory region 600013	431 bp proximal
Tssr39071	transcription start site region 39071	1531 bp upstream