rs27558286 SNP Detail

Summary

• ID
  rs27558286
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:128614057 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAGACTAA GTAGAAAGCT
  ACTGCAATAT GCTGAACAAA AGGATTTCTG ACCCAGGATA ATGCTGCAGT TAAACCGAGG
  TCTTTGCTTT TTATTAACCT CCAAAGATTA ATGACACACA CTTCCCCAAA ACGCCTTTCC
  TGCTTTGATC TATGGGCTCA CTCACCCTCA GGAGCTCCCC CTGGCTTGGG CAAGATATGG
  Y
  ATCATTTGGC TGTAACAATT GTAGCTGCAC AGAAGTGCCA CAGTTTGGAG CAAGAGTAGG
  AGGAGACTCA CAGGCTGGGC AGGAGGCCAG CAGTCCCCGT CCCAGATCTC TTGGTGTGTT
  AGCTCTATAA CACATTGCTG TCGTCATCAG CTGACTGAGA GAGACTGCGT CTCAGCTCAC
  AGTTTTGTGG CTTCTCCTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37722118	NES09171958	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	C		C	T	T	C		T
ss321306915	CHEV_4_128397508	CHEVERUD	SCREENING_POP	f	SNP										T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27558286					SNP	T	T	T	T	T	C	T	T	C	T	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37722118	NES09171958	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:128614057 () rs orientation: forward

Symbol	Name	Function Class
Gm33712	predicted gene, 33712	1111 bp downstream
Phc2	polyhomeotic 2	within coordinates
Rr600012	regulatory region 600012	within coordinates
Rr600013	regulatory region 600013	817 bp proximal
Tssr39071	transcription start site region 39071	1917 bp upstream