rs27558287 SNP Detail

Summary

• ID
  rs27558287
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:128613975 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGGGGTTG TATCTGTGCA
  CTGGGGCGAT TCATTAGAAC TCTGTCCGTA AGATGGATTA CAGCAGGAAG AAACCAGAAT
  CAGGAAGACT AAGTAGAAAG CTACTGCAAT ATGCTGAACA AAAGGATTTC TGACCCAGGA
  TAATGCTGCA GTTAAACCGA GGTCTTTGCT TTTTATTAAC CTCCAAAGAT TAATGACACA
  Y
  ACTTCCCCAA AACGCCTTTC CTGCTTTGAT CTATGGGCTC ACTCACCCTC AGGAGCTCCC
  CCTGGCTTGG GCAAGATATG GTATCATTTG GCTGTAACAA TTGTAGCTGC ACAGAAGTGC
  CACAGTTTGG AGCAAGAGTA GGAGGAGACT CACAGGCTGG GCAGGAGGCC AGCAGTCCCC
  GTCCCAGATC TCTTGGTGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37722119	NES09171957	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T		T	C	C	T		C
ss321306914	CHEV_4_128397426	CHEVERUD	SCREENING_POP	f	SNP										C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27558287					SNP	C	C	C	C	C	C	C	C	T	C	T	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37722119	NES09171957	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:128613975 () rs orientation: forward

Symbol	Name	Function Class
Gm33712	predicted gene, 33712	1193 bp downstream
Phc2	polyhomeotic 2	within coordinates
Rr600012	regulatory region 600012	within coordinates
Rr600013	regulatory region 600013	899 bp proximal
Tssr39071	transcription start site region 39071	1999 bp upstream