rs27561293 SNP Detail

Summary

• ID
  rs27561293
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137591074 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAAT GTGTCACCTG TGGGCCAGCT
  S
  TTGCTTTAAA GCTTGAGGAT GTGGG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37770812	NES09148393	PERLEGEN	MM_PANEL2	f	SNP	G		C	C	G	C	C	C	C		C	G	C	C		C
ss147622969	ENSMUSSNP5911997	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C				C
ss321368363	CHEV_4_137419678	CHEVERUD	SCREENING_POP	f	SNP										C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27561293					SNP	G	G	C	C	G	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37770812	NES09148393	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137591074 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15140	CpG island 15140	909 bp distal
Ece1	endothelin converting enzyme 1	within coordinates
Rr602748	regulatory region 602748	1516 bp distal
Rr602749	regulatory region 602749	349 bp distal
Rr602750	regulatory region 602750	957 bp proximal
Tssr39783	transcription start site region 39783	1514 bp downstream
Tssr39784	transcription start site region 39784	1495 bp downstream
Tssr39785	transcription start site region 39785	1442 bp downstream
Tssr44151	transcription start site region 44151	1654 bp upstream