rs27561295 SNP Detail

Summary

• ID
  rs27561295
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137590607 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTGACTCTC TGGCCTAGAG
  CCAAGGCCTC CGGTTACCTC TCCATCTCAC CCAGGGCCAT TTGCTTCTTC TCTCCCTGTG
  GACCTCTGAT TGCCTCTCCT AGAGCCGAGC TCTTGGCGTG TGTACTGGAC CCAGGACACC
  CTGTGTGGCC TGAGGAGATC TGCCTGGGTT CTCTGCCTTT TGGTCCTAGA GACTTGCCTA
  Y
  ATCTGTGATG TCCCTTCCAT GCCTGAGGGG TTCGCTGAGA AACAGAGGGG CATCATGGAG
  AGAGCTGAAG ATGCTCCAGA GACAGCCTCA GGACCAACCC GTGCCTGGTC AGAAATTAAG
  TCTCCCTTAG ACAGCCCTTT TCTCTCTTAC CCACTGGCGT CTTTCCCCTG AGACATCATT
  GGTCTCTCTG GAGACCGATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss37770814	NES09148465	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs27561295					SNP	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37770814	NES09148465	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137590607 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15140	CpG island 15140	442 bp distal
Ece1	endothelin converting enzyme 1	within coordinates
Rr602748	regulatory region 602748	1049 bp distal
Rr602749	regulatory region 602749	within coordinates
Rr602750	regulatory region 602750	1424 bp proximal
Tssr39783	transcription start site region 39783	1047 bp downstream
Tssr39784	transcription start site region 39784	1028 bp downstream
Tssr39785	transcription start site region 39785	975 bp downstream
Tssr44151	transcription start site region 44151	1187 bp upstream