rs27561296 SNP Detail

Summary

• ID
  rs27561296
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137590397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGATAGTCT GAGGTTCTGA
  GGGTTATCTG GTGTTCCCAG CATCTCCCAG TAATGAATCC TCAGAGGAGG GCCCAAGTGC
  TGACTCCCGT GGTCCAAAGC ACCACGGTAA AGGGGTCCTT GAGGAAGAGG GCTTCTTTGG
  GGGCTCAAGC CTCAAGCCTG ATATCCATCT AATCCAGATC TGGCTGCTTT TGAGAGCTTC
  R
  GAGTGATGAG TTGACTCTCT GGCCTAGAGC CAAGGCCTCC GGTTACCTCT CCATCTCACC
  CAGGGCCATT TGCTTCTTCT CTCCCTGTGG ACCTCTGATT GCCTCTCCTA GAGCCGAGCT
  CTTGGCGTGT GTACTGGACC CAGGACACCC TGTGTGGCCT GAGGAGATCT GCCTGGGTTC
  TCTGCCTTTT GGTCCTAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss37770815	NES09148464	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs27561296					SNP	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37770815	NES09148464	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137590397 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15140	CpG island 15140	232 bp distal
Ece1	endothelin converting enzyme 1	within coordinates
Rr602748	regulatory region 602748	839 bp distal
Rr602749	regulatory region 602749	within coordinates
Rr602750	regulatory region 602750	1634 bp proximal
Tssr39783	transcription start site region 39783	837 bp downstream
Tssr39784	transcription start site region 39784	818 bp downstream
Tssr39785	transcription start site region 39785	765 bp downstream
Tssr44151	transcription start site region 44151	977 bp upstream