rs27561300 SNP Detail

Summary

• ID
  rs27561300
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137589630 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCGT AGAGCTCAGC CCAGCGCACT
  Y
  GGAGCTGGAG CCTTAGCGGG AGGTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BTBR T<+> Itpr3/J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss37770819	NES09148456	PERLEGEN	MM_PANEL2	f	SNP		T		C	C
ss147622950	ENSMUSSNP4927191	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
ss321368359	CHEV_4_137418234	CHEVERUD	SCREENING_POP	f	SNP			C			C
SNP Consensus Information
SNP					Consensus Type	A/J	BTBR T<+> Itpr3/J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs27561300					SNP	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37770819	NES09148456	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137589630 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15140	CpG island 15140	within coordinates
Ece1	endothelin converting enzyme 1	within coordinates
Rr602748	regulatory region 602748	72 bp distal
Rr602749	regulatory region 602749	within coordinates
Tssr39783	transcription start site region 39783	70 bp downstream
Tssr39784	transcription start site region 39784	51 bp downstream
Tssr39785	transcription start site region 39785	within coordinates
Tssr44151	transcription start site region 44151	210 bp upstream