rs27561301 SNP Detail

Summary

• ID
  rs27561301
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137589355 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGGCG AGGTGTAGAT TAGGCACGCC
  R
  AGCTGGAGGT TCGGGCCCGC ACCCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss37770820	NES09148454	PERLEGEN	MM_PANEL2	f	SNP		G	G	A			A	G		G
ss147622945	ENSMUSSNP1538567	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G			G
ss321368358	CHEV_4_137417959	CHEVERUD	SCREENING_POP	f	SNP						A			G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs27561301					SNP	A	G	G	A	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37770820	NES09148454	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137589355 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15140	CpG island 15140	within coordinates
Ece1	endothelin converting enzyme 1	193 bp upstream
Rr602748	regulatory region 602748	within coordinates
Rr602749	regulatory region 602749	204 bp proximal
Tssr39783	transcription start site region 39783	194 bp upstream
Tssr39784	transcription start site region 39784	208 bp upstream
Tssr39785	transcription start site region 39785	226 bp upstream
Tssr44151	transcription start site region 44151	45 bp downstream