rs27561303 SNP Detail

Summary

• ID
  rs27561303
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137588866 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACGGGATTC ACTCACCGGC TACTCTTTCA CAACAGGGGC
  ACAAAGCCTC TTTCTACTAC ACCCACATGC GTGCCCAACA GGTCACAAAT GCACGGCTCA
  M
  CCAGTACGTA CAGTTTCCTG GTCTTTCTTC CTCTGCACCT GCGCAGCGGG CATAAAGAGA
  AAGTTTCTCT ACTGGAGGTC TAAGTGCCCC CGCCTACTGG                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss37770822	NES09148448	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	A	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs27561303					SNP	C	C	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37770822	NES09148448	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137588866 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15140	CpG island 15140	299 bp proximal
Ece1	endothelin converting enzyme 1	682 bp upstream
Rr602748	regulatory region 602748	192 bp proximal
Rr602749	regulatory region 602749	693 bp proximal
Tssr39783	transcription start site region 39783	683 bp upstream
Tssr39784	transcription start site region 39784	697 bp upstream
Tssr39785	transcription start site region 39785	715 bp upstream
Tssr44151	transcription start site region 44151	534 bp downstream