rs27561304 SNP Detail

Summary

• ID
  rs27561304
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137588749 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGCCACCTA CAACGCTGTG GTAAATCTCT GCCGTGTGTG
  TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTCTCAAGC TGCATGCTCG
  M
  ACACACATGT ACACCAAACG GGATTCACTC ACCGGCTACT CTTTCACAAC AGGGGCACAA
  AGCCTCTTTC TACTACACCC ACATGCGTGC CCAACAGGTC                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BTBR T<+> Itpr3/J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss37770823	NES09148445	PERLEGEN	MM_PANEL2	f	SNP	A	A	C	A	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	BTBR T<+> Itpr3/J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs27561304					SNP	A	A	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37770823	NES09148445	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137588749 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15140	CpG island 15140	416 bp proximal
Ece1	endothelin converting enzyme 1	799 bp upstream
Rr602748	regulatory region 602748	309 bp proximal
Rr602749	regulatory region 602749	810 bp proximal
Tssr39783	transcription start site region 39783	800 bp upstream
Tssr39784	transcription start site region 39784	814 bp upstream
Tssr39785	transcription start site region 39785	832 bp upstream
Tssr44151	transcription start site region 44151	651 bp downstream