rs27561305 SNP Detail

Summary

• ID
  rs27561305
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:137588145 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGGGCACAC CTGTAACCTC AAGCACTCCA GAGGCAGAGG
  TAGGATTGGG GTAGTGTGGG CTAGGTTATT GAGACCCATC TCTGTTTGGG TAGTGTGGGC
  Y
  AGGTTATTGA GACCCATCTC TGTTTGTTTT TTGTGTTGGT TGGTTGGTTT GTCGAGACAG
  GGTTTCTCTG TGTAGCCCTG GCTGTCCTAG AACTTGCTCT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss37770824	NES09148475	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs27561305					SNP	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37770824	NES09148475	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:137588145 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15140	CpG island 15140	1020 bp proximal
Ece1	endothelin converting enzyme 1	1403 bp upstream
Rr602748	regulatory region 602748	913 bp proximal
Rr602749	regulatory region 602749	1414 bp proximal
Tssr39783	transcription start site region 39783	1404 bp upstream
Tssr39784	transcription start site region 39784	1418 bp upstream
Tssr39785	transcription start site region 39785	1436 bp upstream
Tssr44151	transcription start site region 44151	1255 bp downstream