rs27562867 SNP Detail

Summary

• ID
  rs27562867
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:138832519 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTATA TTGCTAACAC GTGATGGGCC
  R
  GCAGACACCA CTGTAATCCA GCACA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37765896	NES09139273	PERLEGEN	MM_PANEL2	f	SNP	A		A	G	G	A	G		A	G	G	G		A		A	G	G		G
ss45665399	mCV23713947	ABI	CRAMUS_MOUSE	f	SNP		A	A					A		G
ss147665359	ENSMUSSNP1982078	ENSEMBL	ENSEMBL_Sanger	f	SNP		A								G					A
ss321379430	CHEV_4_138661123	CHEVERUD	SCREENING_POP	f	SNP													G						G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27562867					SNP	A	A	A	G	G	A	G	A	A	G	G	G	G	A	A	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37765896	NES09139273	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138832519 () rs orientation: forward

Symbol	Name	Function Class
Micos10	mitochondrial contact site and cristae organizing system subunit 10	within coordinates
Rr92728	regulatory region 92728	119 bp distal
Rr92729	regulatory region 92729	82 bp proximal
Rr103226	regulatory region 103226	919 bp distal