rs27562874 SNP Detail

Summary

• ID
  rs27562874
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:138831369 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTAGA ACAGACAGCG ATGCTCTGAC
  W
  CCACCTGCTG CAGCCTCAAG CAACC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37765903	NES09139365	PERLEGEN	MM_PANEL2	f	SNP	T		T	A	A	T	A		T	A	A	A		T	T	A	A		A
ss45631730	mCV23713929	ABI	CRAMUS_MOUSE	f	SNP		T	T					T		A
ss147665328	ENSMUSSNP3142337	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							A
ss321379422	CHEV_4_138659973	CHEVERUD	SCREENING_POP	f	SNP													A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27562874					SNP	T	T	T	A	A	T	A	T	T	A	A	A	A	T	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37765903	NES09139365	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138831369 () rs orientation: forward

Symbol	Name	Function Class
Micos10	mitochondrial contact site and cristae organizing system subunit 10	within coordinates
Rr92727	regulatory region 92727	1369 bp distal
Rr92728	regulatory region 92728	432 bp proximal
Rr92729	regulatory region 92729	1232 bp proximal
Rr103226	regulatory region 103226	32 bp proximal