rs27563194 SNP Detail

Summary

• ID
  rs27563194
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134101872 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGGCCTCTG AGGGTGACCT TGACCTTAGG ACTGGAAAGG
  AAGCAACATT GTTTGGGGTT TGCCTGCACT GGGATGGAAC CTTCCTACTT CCCCAAGCTG
  R
  GTAACTGCTC CCCTACTGAG CTGCCTCCTG GCTACATTTT TGTTTGGTTT GCTGGCCTTG
  AACTAGCTAT GTAGTCAAGA AATCTCTTGA ATGTCTGCTC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37761927	NES09159592	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27563194					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37761927	NES09159592	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134101872 () rs orientation: forward

Symbol	Name	Function Class
Extl1	exostosin-like glycosyltransferase 1	1979 bp upstream
Rr601652	regulatory region 601652	1678 bp distal
Rr601653	regulatory region 601653	349 bp distal
Tssr43896	transcription start site region 43896	2000 bp upstream
Tssr43897	transcription start site region 43897	1972 bp upstream