rs27563195 SNP Detail

Summary

• ID
  rs27563195
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134100884 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGGC TTGGAATTGG CAGAAGGTTC
  Y
  CTTCCTCTAG GAAGCGGCTG AGACT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37761928	NES09159640	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	C	T	T	C		T	T	T		T
ss147527509	ENSMUSSNP4942244	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						T
ss321347234	CHEV_4_133929488	CHEVERUD	SCREENING_POP	f	SNP												T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27563195					SNP	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37761928	NES09159640	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134100884 () rs orientation: forward

Symbol	Name	Function Class
Extl1	exostosin-like glycosyltransferase 1	991 bp upstream
Rr601652	regulatory region 601652	690 bp distal
Rr601653	regulatory region 601653	618 bp proximal
Tssr43895	transcription start site region 43895	1939 bp upstream
Tssr43896	transcription start site region 43896	1012 bp upstream
Tssr43897	transcription start site region 43897	984 bp upstream