rs27563198 SNP Detail

Summary

• ID
  rs27563198
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134100634 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGTC CTACAAGAGC ACTTGGTGGG
  R
  TGTCCTTCAA CAAGGAAGTA TCCTT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37761931	NES09159637	PERLEGEN	MM_PANEL2	f	SNP			A	A	A		G	A	A	G		A	A	A	A		A
ss45724678	mCV22573442	ABI	CRAMUS_MOUSE	f	SNP	A	A				G		A
ss147527495	ENSMUSSNP6603796	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A						A
ss321347231	CHEV_4_133929238	CHEVERUD	SCREENING_POP	f	SNP											A					A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27563198					SNP	A	A	A	A	A	G	G	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37761931	NES09159637	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134100634 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15037	CpG island 15037	1788 bp distal
Extl1	exostosin-like glycosyltransferase 1	741 bp upstream
Rr601651	regulatory region 601651	1783 bp distal
Rr601652	regulatory region 601652	440 bp distal
Rr601653	regulatory region 601653	868 bp proximal
Tssr43895	transcription start site region 43895	1689 bp upstream
Tssr43896	transcription start site region 43896	762 bp upstream
Tssr43897	transcription start site region 43897	734 bp upstream