rs27563200 SNP Detail

Summary

• ID
  rs27563200
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134099859 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCAG GTCCCACTCC AGAAGGTATC
  W
  AGTCGGTCCA GCTCTCTTTC GCAGC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37761933	NES09159772	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		T	T	T	A		T	T	T	T		T
ss45640788	mCV22573477	ABI	CRAMUS_MOUSE	f	SNP		T	T					A		T
ss147527459	ENSMUSSNP717939	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							T
ss321347224	CHEV_4_133928463	CHEVERUD	SCREENING_POP	f	SNP													A					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27563200					SNP	T	T	T	T	T	T	T	A	T	T	T	A	A	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37761933	NES09159772	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134099859 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15037	CpG island 15037	1013 bp distal
Extl1	exostosin-like glycosyltransferase 1	within coordinates
Rr601651	regulatory region 601651	1008 bp distal
Rr601652	regulatory region 601652	within coordinates
Rr601653	regulatory region 601653	1643 bp proximal
Tssr43895	transcription start site region 43895	914 bp upstream
Tssr43896	transcription start site region 43896	within coordinates
Tssr43897	transcription start site region 43897	27 bp downstream