rs27563201 SNP Detail

Summary

• ID
  rs27563201
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134099830 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCCAGCTG AAGTTGGAGC
  CGGAGTGCAT CCCATGCCCG CCGCCTGGGG AATGAGAAGG TTCGGAGTGT GGTCTTCTTC
  CCCTCGGCTA TGGCCCCTAA CCCAGGCAGC TGCTCTGCAC CCTCCGGCTA GGAGCTGTCA
  CAGGGCAGAG GGCAAGACCT ACGCTCCAAA TTCCTGTTCC TGCCCCACAG GTCCAGCCGG
  Y
  AGCTCCAGGT CCCACTCCAG AAGGTATCAA GTCGGTCCAG CTCTCTTTCG CAGCAGCAGC
  AGCCTGGCCA CACCCCCGCC AGCTCTGATT GGCTCCTGGC TAGGAGGCAG GGTTTCCACT
  TAACCCCTTG CAACCTCTTT CGCTGGGGTA CCGTTTCGTT TCTTTTTCCT TTTTTTTTTT
  TTTTGAGACG AGGGGGGTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37761934	NES09159771	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27563201					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37761934	NES09159771	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134099830 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15037	CpG island 15037	984 bp distal
Extl1	exostosin-like glycosyltransferase 1	within coordinates
Rr601651	regulatory region 601651	979 bp distal
Rr601652	regulatory region 601652	29 bp proximal
Rr601653	regulatory region 601653	1672 bp proximal
Tssr43895	transcription start site region 43895	885 bp upstream
Tssr43896	transcription start site region 43896	10 bp downstream
Tssr43897	transcription start site region 43897	56 bp downstream