rs27563204 SNP Detail

Summary

• ID
  rs27563204
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134099257 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGTGAGGA ATTTCTGTAG
  CAAGTGGAGG AGGCGACCCC AGGCAGGAGG GAGCTGGAAA TCAGCCTTCT GGTCCAGCGC
  TCTCACCATT GAAGGCAGGT CCCCTAGCTA AGTTCGACTA ACCATTGGCC ACCTGTGGGA
  TTGACCCCTC GTGGGAAGTC CAAGGAGGCT CTGGCTTTCT AAATTTGCAT TCCCACTCTC
  S
  GACTGCTTTC TCTACCTTCA CACAACCTTG CCACCCTTTG CCCTCTCATC GGGACCTCTG
  CCCTGGGCCA CTGCTCGGGC TGATGCAACC CTTGTCCAGA CCACAAGATC GTGTCCATTT
  GCGCTCAGGA CTGCACCCCT GATCTTACCC TTGACCCAAG GGCAGGCTAT CTATGGAGAA
  CTGTCTGGGT TCATGGGGAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37761937	NES09159768	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	G	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27563204					SNP	C	C	C	C	C	G	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37761937	NES09159768	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134099257 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15037	CpG island 15037	411 bp distal
Extl1	exostosin-like glycosyltransferase 1	within coordinates
Rr601651	regulatory region 601651	406 bp distal
Rr601652	regulatory region 601652	602 bp proximal
Tssr43895	transcription start site region 43895	312 bp upstream
Tssr43896	transcription start site region 43896	583 bp downstream
Tssr43897	transcription start site region 43897	629 bp downstream