rs27563205 SNP Detail

Summary

• ID
  rs27563205
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134098935 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAGC GCCCTGGAAG AGGACCGGGC
  R
  ACACTGCCAG GCGAAGGGGG AAGAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37761938	NES09159767	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G		A	G	G	A		G	G	G	G		G
ss45721759	mCV22573663	ABI	CRAMUS_MOUSE	f	SNP		G	G					A		G
ss147527443	ENSMUSSNP6638363	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							G
ss321347221	CHEV_4_133927539	CHEVERUD	SCREENING_POP	f	SNP													G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27563205					SNP	G	G	G	G	G	G	G	A	A	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37761938	NES09159767	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134098935 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15037	CpG island 15037	89 bp distal
Extl1	exostosin-like glycosyltransferase 1	within coordinates
Rr601651	regulatory region 601651	84 bp distal
Rr601652	regulatory region 601652	924 bp proximal
Tssr43895	transcription start site region 43895	within coordinates
Tssr43896	transcription start site region 43896	905 bp downstream
Tssr43897	transcription start site region 43897	951 bp downstream