rs27563206 SNP Detail

Summary

• ID
  rs27563206
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134098675 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGGAAGATG TCCGAGGAGG
  GGCTGGCCTC AGCTACCATC GCCTGTCCCA GCCTGGTGCA AGGGGCTGGG TAGAGACTCA
  ACACCAGATG GTTCCGGCCT CCGTTCCAGT TCGGAGGCAG GGGCCCGCAG GCTCCTCTAC
  GATCCTGGCT GGGGAGAAAA AGGAGAAGGC AAGCGTCTGC TGGGCTGAGT GCAGAGTAGC
  K
  GGAGCCTTCC AAGGAATCCA GGATCCTGCG CTGAGCCTCA GAGGTCGGAC CAGCCGGGGA
  GTGCACAAAG ATCTTGAGGA CCTTTCCCCT ACACTTGGAG GTGTCAAAGC AGGCTCCCCA
  GGTGCAGCTG CTTCCCCGAG AGACCCGAGG GAGCTGTGCG ACATCTTCTG GGTTCGTCTC
  AGACTGGGAG AAACTCTGTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37761939	NES09159766	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27563206					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37761939	NES09159766	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134098675 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15037	CpG island 15037	within coordinates
Extl1	exostosin-like glycosyltransferase 1	within coordinates
Rr601651	regulatory region 601651	155 bp proximal
Rr601652	regulatory region 601652	1184 bp proximal
Tssr43895	transcription start site region 43895	250 bp downstream
Tssr43896	transcription start site region 43896	1165 bp downstream
Tssr43897	transcription start site region 43897	1211 bp downstream