rs27563211 SNP Detail

Summary

• ID
  rs27563211
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134098072 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTACTTCCC CCTACCACGT
  CATTGTTTAT GGAAGTGCTA TCACCCGAGT GAGCGAATGG TATACAAATG TCTGTTACAT
  AAAACGTTAG AGTAGGAGGG ACCAGCATAC CAGGCATGGA GGAGGTGGGA GGGGGAGGCA
  GCCTGCTATG TTTCTAAGAT CCCCAAGGGA GAATTCCAAA AATCTGCCTT TCACACCCTC
  K
  GAGACTTATC ACTCCAGCTT GGTGGAGATC TGCTCTGCTG TCTTAACCCT CTCTCTCCTA
  CTGCGGCTGA GAGTTTGTCG GACAGGATGA CAATCTTAAC CCTTCACTCC ATCCTCTGGA
  TCTGCTCCTG TCCCAGCCGC CTCCCACTCA GGAGTTCCCT CCCACTCAGC GGCTCCCCAA
  GGGTAGGTTT ACTTACTGCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37761944	NES09159757	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27563211					SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37761944	NES09159757	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134098072 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15037	CpG island 15037	219 bp proximal
Extl1	exostosin-like glycosyltransferase 1	within coordinates
Rr601651	regulatory region 601651	758 bp proximal
Rr601652	regulatory region 601652	1787 bp proximal
Tssr43895	transcription start site region 43895	853 bp downstream
Tssr43896	transcription start site region 43896	1768 bp downstream
Tssr43897	transcription start site region 43897	1814 bp downstream