rs27563212 SNP Detail

Summary

• ID
  rs27563212
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134097921 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTTA TGGAAGTGCT ATCACCCGAG
  Y
  GAGCGAATGG TATACAAATG TCTGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss37761945	NES09159755	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs27563212					SNP	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37761945	NES09159755	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134097921 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15037	CpG island 15037	370 bp proximal
Extl1	exostosin-like glycosyltransferase 1	within coordinates
Rr601651	regulatory region 601651	909 bp proximal
Rr601652	regulatory region 601652	1938 bp proximal
Tssr43895	transcription start site region 43895	1004 bp downstream
Tssr43896	transcription start site region 43896	1919 bp downstream
Tssr43897	transcription start site region 43897	1965 bp downstream