rs27563687 SNP Detail

Summary

• ID
  rs27563687
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:127303727 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTCCTCT GTTGGAGCCA
  GGAGCCATGT GATACTGGGT TTGTCTCTCA TTTCTTTGTG TCTGTTTCAA ACATAGGCAA
  CTCCCACCTC GGAGTGATAA AGGCAAATTT AAGTGGGGCC ATGCTATGAA CTAACTGGCC
  AAGTGCTTGG ATATGGAAAG GTGAGTAAAT CTCACCCTCC TTCCTCTCGG TCCATCTTCA
  Y
  ACTTGTTGGC GAAAGAGTAG GGAAGAGAAG GAAGAGAAAA AGGTTAAGGG CACCAAAAGA
  AACATCCCAA CTGCCCCTTC TTTTCCCTTT CCTCTTCAGG GCTGGCCCTG AGGGAGGAGA
  CAGGGTTGGG ACTGCTTAGA GTGCTGGGTT AATGAAGAAC AGAGCCCACT CCGAAGCTGT
  CACCATTGAT TTCTGTCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37729116	NES09188607	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C	C	C		C	C	C	C	C	C	C	C	C
ss45665542	mCV24235702	ABI	CRAMUS_MOUSE	f	SNP		C	T					C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27563687					SNP	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37729116	NES09188607	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:127303727 () rs orientation: forward

Symbol	Name	Function Class
Gm12947	predicted gene 12947	1136 bp upstream
Rr377159	regulatory region 377159	1425 bp downstream
Tssr43429	transcription start site region 43429	1114 bp upstream