rs27563688 SNP Detail

Summary

• ID
  rs27563688
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:127303719 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCCATCCC TCTCCTCTGT
  TGGAGCCAGG AGCCATGTGA TACTGGGTTT GTCTCTCATT TCTTTGTGTC TGTTTCAAAC
  ATAGGCAACT CCCACCTCGG AGTGATAAAG GCAAATTTAA GTGGGGCCAT GCTATGAACT
  AACTGGCCAA GTGCTTGGAT ATGGAAAGGT GAGTAAATCT CACCCTCCTT CCTCTCGGTC
  Y
  ATCTTCACAC TTGTTGGCGA AAGAGTAGGG AAGAGAAGGA AGAGAAAAAG GTTAAGGGCA
  CCAAAAGAAA CATCCCAACT GCCCCTTCTT TTCCCTTTCC TCTTCAGGGC TGGCCCTGAG
  GGAGGAGACA GGGTTGGGAC TGCTTAGAGT GCTGGGTTAA TGAAGAACAG AGCCCACTCC
  GAAGCTGTCA CCATTGATTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37729117	NES09188605	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27563688					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37729117	NES09188605	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:127303719 () rs orientation: forward

Symbol	Name	Function Class
Gm12947	predicted gene 12947	1128 bp upstream
Rr377159	regulatory region 377159	1417 bp downstream
Tssr43429	transcription start site region 43429	1106 bp upstream