rs27563689 SNP Detail

Summary

• ID
  rs27563689
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:127303714 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGGCTCCC ATCCCTCTCC
  TCTGTTGGAG CCAGGAGCCA TGTGATACTG GGTTTGTCTC TCATTTCTTT GTGTCTGTTT
  CAAACATAGG CAACTCCCAC CTCGGAGTGA TAAAGGCAAA TTTAAGTGGG GCCATGCTAT
  GAACTAACTG GCCAAGTGCT TGGATATGGA AAGGTGAGTA AATCTCACCC TCCTTCCTCT
  Y
  GGTCCATCTT CACACTTGTT GGCGAAAGAG TAGGGAAGAG AAGGAAGAGA AAAAGGTTAA
  GGGCACCAAA AGAAACATCC CAACTGCCCC TTCTTTTCCC TTTCCTCTTC AGGGCTGGCC
  CTGAGGGAGG AGACAGGGTT GGGACTGCTT AGAGTGCTGG GTTAATGAAG AACAGAGCCC
  ACTCCGAAGC TGTCACCATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37729118	NES09188603	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27563689					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37729118	NES09188603	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:127303714 () rs orientation: forward

Symbol	Name	Function Class
Gm12947	predicted gene 12947	1123 bp upstream
Rr377159	regulatory region 377159	1412 bp downstream
Tssr43429	transcription start site region 43429	1101 bp upstream