rs27563699 SNP Detail

Summary

• ID
  rs27563699
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:127302361 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGGCCTCG GCTATTTGGG
  GGGATGAATC GGGAGGAGTG GGTGGCACCA ATCCCAGGCT GGCCATGCTT TACAGGTTTG
  TAGGTGATGG AGAACTTGCC CTGGTAGTGG CCGATCATCT CTGGTTTGAT CTTCACCTGG
  TTGAAGGGCT TGCCATTGTA CACGCCCACC ATGCTGCCCA CCATCTCGGG CAGGATGATC
  W
  TGTCCCTAAG GTGTGATATG ACCTTGGGCT TCTCCATGGG TGGTGCCTCC TTCTTGGCCT
  TTCTCAAGTG CTTGAGCAGT GAGTGGTTCA CGGTTCAGGC GCCGCCTTTG GCGGGCGCTG
  TACAACTGCA TCAGCTACTC ATAGGACATG TCGAGAAGTT GGTCGAGGTC TACGACACGG
  TAGGTGAACT TGCGGAAGGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37729128	NES09188591	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27563699					SNP	T	T	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37729128	NES09188591	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:127302361 () rs orientation: forward

Symbol	Name	Function Class
Gm12947	predicted gene 12947	within coordinates
Rr377159	regulatory region 377159	59 bp downstream
Tssr43429	transcription start site region 43429	250 bp downstream