rs27563701 SNP Detail

Summary

• ID
  rs27563701
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:127302308 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGAATACC ACTCTTTTTC
  TTTTTTTCCC CAGGGACCAA GAAGTGAGTC TTTATTGGCC TCGGCTATTT GGGGGGATGA
  ATCGGGAGGA GTGGGTGGCA CCAATCCCAG GCTGGCCATG CTTTACAGGT TTGTAGGTGA
  TGGAGAACTT GCCCTGGTAG TGGCCGATCA TCTCTGGTTT GATCTTCACC TGGTTGAAGG
  K
  CTTGCCATTG TACACGCCCA CCATGCTGCC CACCATCTCG GGCAGGATGA TCTTGTCCCT
  AAGGTGTGAT ATGACCTTGG GCTTCTCCAT GGGTGGTGCC TCCTTCTTGG CCTTTCTCAA
  GTGCTTGAGC AGTGAGTGGT TCACGGTTCA GGCGCCGCCT TTGGCGGGCG CTGTACAACT
  GCATCAGCTA CTCATAGGAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37729130	NES09188589	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27563701					SNP	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37729130	NES09188589	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:127302308 () rs orientation: forward

Symbol	Name	Function Class
Gm12947	predicted gene 12947	within coordinates
Rr377159	regulatory region 377159	6 bp downstream
Tssr43429	transcription start site region 43429	303 bp downstream