rs27563702 SNP Detail

Summary

• ID
  rs27563702
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:127301250 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTAGCCAA TCTTGGTTGG
  GTTTGAATCC AGACCTGCTA TTGACATCTT TAGCCTAGAG ATCCCCTTTT TGTATAGGAG
  AATAATATTG CTCCAACATG ACCTAACATT TGTCTCGGTG GTAGATTCAG AGTTTGGAAA
  GTGAGTGCTC AAAAGGCACT CAGCACATTA CAAGCTTTGG TTGTTTTTGT TAGTAATGAA
  Y
  CGAATTCCAG TATTTAAAAT GGTGTGAGGT GTTTATGAGT ACTTCTCTTA TTTTACAACA
  ATAACAATCC CATAAGAATG AAAAATATGT TCTTTTCAAT ATAAATACAT GATTCCCTAC
  TGATAGTGTT CAGTGTGTTA AAATGTGGGA TAGTTGTCTG GAGAGATGGC TCAGAGGTTA
  AGAGTACTGG CTGCACTTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37729131	NES09188667	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27563702					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37729131	NES09188667	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:127301250 () rs orientation: forward

Symbol	Name	Function Class
Gm12947	predicted gene 12947	922 bp downstream
Rr377159	regulatory region 377159	within coordinates
Tssr43429	transcription start site region 43429	1361 bp downstream