rs27566201 SNP Detail

Summary

• ID
  rs27566201
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:125856533 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAAAAGAGC ATAACTGGAA
  AGAGACCGGT TCCGAGGCCA TGGGCACACT CAGAACAGGA GGTTCATTGG GACCAAACAC
  ACCCACAGCT GAGATGTGAC CTTGGGTGAA GGGTTTTCCT GGGTCTAAGA GGACCCAGCT
  CTAGAACACT AGGAATGTCC TTATCTTGTC CAAGGTAAGG TTTGGAGTCT AGCACACAGA
  R
  GAAGTCATGG AACATTTAGA ACAGTCCTCA CCCTAATGGA CCCGCACTTT CCTTTATGTG
  GGAAAACAAC GGTGGGAAAT CCCCCCAGGG CTGTCTCTAA GTGGGGAACC ATGGAAAAGG
  AGCAACAGGA ATTGAAACCT GTACCACCTG CATCCGACAG CTTCGGAAAG CCCCGATCCA
  TAGTGTGGGC ATCGGGCGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37733234	NES09195071	PERLEGEN	MM_PANEL2	f	SNP	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A
ss147404284	ENSMUSSNP3491789	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27566201					SNP	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37733234	NES09195071	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:125856533 () rs orientation: forward

Symbol	Name	Function Class
Gm57079	predicted gene, 57079	within coordinates
Rr398483	regulatory region 398483	32 bp upstream
Rr599574	regulatory region 599574	1378 bp distal
Rr599575	regulatory region 599575	within coordinates
Rr599576	regulatory region 599576	193 bp proximal