rs27566202 SNP Detail

Summary

• ID
  rs27566202
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:125856456 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCAACTGT ATGAAGAACG
  GCAGGGACAG TGTTGTTGGA GGGAACAGCA AAGCAAAGGC TCTGGGGCTG CAGTTGGGTA
  AAAGAGCATA ACTGGAAAGA GACCGGTTCC GAGGCCATGG GCACACTCAG AACAGGAGGT
  TCATTGGGAC CAAACACACC CACAGCTGAG ATGTGACCTT GGGTGAAGGG TTTTCCTGGG
  K
  CTAAGAGGAC CCAGCTCTAG AACACTAGGA ATGTCCTTAT CTTGTCCAAG GTAAGGTTTG
  GAGTCTAGCA CACAGAAGAA GTCATGGAAC ATTTAGAACA GTCCTCACCC TAATGGACCC
  GCACTTTCCT TTATGTGGGA AAACAACGGT GGGAAATCCC CCCAGGGCTG TCTCTAAGTG
  GGGAACCATG GAAAAGGAGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37733235	NES09195069	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	G	T	T	G	G	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27566202					SNP	T	T	T	T	T	G	T	T	G	G	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37733235	NES09195069	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:125856456 () rs orientation: forward

Symbol	Name	Function Class
Gm57079	predicted gene, 57079	within coordinates
Rr398483	regulatory region 398483	109 bp upstream
Rr599574	regulatory region 599574	1301 bp distal
Rr599575	regulatory region 599575	within coordinates
Rr599576	regulatory region 599576	270 bp proximal