rs27566210 SNP Detail

Summary

• ID
  rs27566210
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:125855688 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTATACAA TTTGCCCACT
  GAGGCATCTC CCCAGCCTCT CACTCATCGT TTCCAATAGT CAATATAGGC GTGTAATTCA
  TAATTCACAC AAAAGCGTAC CCAGAGAAAA ATCTCTCTTC CCCCTGTGAC TCTTAGCCAC
  CACCCTGTCC CCCTCACTGG CAAACAAAAC AAAACAGCAG CAACAACAAC AACAAAAACC
  Y
  AGAGTTTAAG CAGGAGGAAC TAAAGTTCCA CTTAGGTGTC TGAGGATGGG GGTGACAAGC
  AGCCCACCGC CCTATCACTC CCTCGCTCAG AAGTGCCCAC ATGGCTTCTC CCACTGCCAA
  GTGCAATACA GAGCCTTTCT GGAAACACGC TGGCCATGGG CCTTCCTTCT AATAACTGAC
  AGCATTAGCC ATCAGAAACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37733243	NES09195085	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27566210					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37733243	NES09195085	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:125855688 () rs orientation: forward

Symbol	Name	Function Class
Gm57079	predicted gene, 57079	within coordinates
Rr398483	regulatory region 398483	877 bp upstream
Rr599574	regulatory region 599574	533 bp distal
Rr599575	regulatory region 599575	720 bp proximal
Rr599576	regulatory region 599576	1038 bp proximal