rs27566219 SNP Detail

Summary

• ID
  rs27566219
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:125854582 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTAGAAGG CCATTTAGGG
  TCCTGGTGAC TCTTGGTCAC TCAGCAGGCA TCCCTAAACA GTGGCGTGCA TGCGAGTTTC
  AACAGGGCTA ACACCAATTA AAGAATCAGG TTCTTGTCAT ACCATTCTCA GCTCTCCTCT
  GATGGACCAA AGGGTCTTGG GGCCCGGGCT AGACGAGGGA TGGAACTCAC CTCTCTGGTG
  Y
  GGCCCCACCT CCCAGAATAG GAACAGCTCT TCCTCCCTCC TAACAGTGCC AGGGAGCTGC
  AGATCCTGCT CTCTAATTAG ACCTGTCGCC AGCCGGAATC ACTCCCAGGC TGGGCTGGGG
  AGGTCATTAG CTGGAGATGG ATAAGTGCTA AGCCAGCCCC ACTCTGGAGA TTTACAAGGC
  ACGGGCGAGG GAGGATTTAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37733252	NES09174162	PERLEGEN	MM_PANEL2	f	SNP	T		C	T	T	T	T		C	T	T	T	C	T	T	T	T
ss45601563	mCV22831408	ABI	CRAMUS_MOUSE	f	SNP		T	C					T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27566219					SNP	T	T	C	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37733252	NES09174162	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:125854582 () rs orientation: forward

Symbol	Name	Function Class
Gm57079	predicted gene, 57079	within coordinates
Rr398483	regulatory region 398483	1983 bp upstream
Rr599574	regulatory region 599574	within coordinates
Rr599575	regulatory region 599575	1826 bp proximal