rs27567987 SNP Detail

Summary

• ID
  rs27567987
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:139073425 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAACT CTGCAGGACA CACTGGTCCA
  Y
  AAGCAGCCGC GGGTCGGGCC TGGCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
ss37764911	NES09132014	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	T				T	T	C
ss45668699	mCV24062625	ABI	CRAMUS_MOUSE	f	SNP		T	T			T	C
ss147670826	ENSMUSSNP3122155	ENSEMBL	ENSEMBL_Sanger	f	SNP			T				C
ss321381228	CHEV_4_138902029	CHEVERUD	SCREENING_POP	f	SNP								C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
rs27567987					SNP	T	T	T	C	T	T	C	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37764911	NES09132014	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:139073425 () rs orientation: forward

Symbol	Name	Function Class
Ccnd3-ps	cyclin D3, pseudogene	within coordinates
Cpgi15166	CpG island 15166	within coordinates
Gm70501	predicted gene, 70501	1763 bp downstream
Mrto4	mRNA turnover 4, ribosome maturation factor	1326 bp downstream
Rr603197	regulatory region 603197	1971 bp distal
Rr603198	regulatory region 603198	within coordinates
Tssr44225	transcription start site region 44225	94 bp upstream