rs27567988 SNP Detail

Summary

• ID
  rs27567988
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:139073020 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCCGCAGA CATAGAGCAG
  GCGCCTAGGC CTAGCACTGC CGCCCCAATG CTGCCTGTGG CAATCATGGA TGGAGGATAC
  ATCGCAAAGG TGTAATCTGT AGCACAGAGG GCCAAAAAAG TCTGGGCATG CTTTTTGACC
  AAGGCCTGCC AACCACTGGG CAGAGACAGG CGGTGCAGAA TCAGGGCCAG GAAGTCGTGC
  R
  CAATCACAGC AGCCAGGTCC CACTTGAGCT TCCCCAGGAC CAGCACCTCC CACTCCCGCA
  ACTGCCATGG AGCCACAGCC TGGTCCGTAA TAGATGCAAA GCTTCTCAAT AGTCAGGGGC
  GTGGTTTCGC GCAGCTTGGA GGCCAGCAAC AGGCAGACGG GTACCTAGAA GCTGCAATTG
  CGCCTTTCGG GTGGGGACGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37764912	NES09132013	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27567988					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37764912	NES09132013	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:139073020 () rs orientation: forward

Symbol	Name	Function Class
Ccnd3-ps	cyclin D3, pseudogene	within coordinates
Cpgi15166	CpG island 15166	68 bp proximal
Gm70501	predicted gene, 70501	1358 bp downstream
Mrto4	mRNA turnover 4, ribosome maturation factor	1731 bp downstream
Rr603197	regulatory region 603197	1566 bp distal
Rr603198	regulatory region 603198	within coordinates
Tssr44225	transcription start site region 44225	286 bp downstream