rs27567990 SNP Detail

Summary

• ID
  rs27567990
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:139072916 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGAGG ATACATCGCA AAGGTGTAAT
  Y
  TGTAGCACAG AGGGCCAAAA AAGTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37764914	NES09132011	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	T	C	T			T	T		C	C	T	T		T
ss45639597	mCV24062602	ABI	CRAMUS_MOUSE	f	SNP	C	C	C					C	T
ss147670800	ENSMUSSNP5899945	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						T
ss321381224	CHEV_4_138901520	CHEVERUD	SCREENING_POP	f	SNP												T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27567990					SNP	C	C	C	T	T	C	T	C	T	T	T	T	C	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37764914	NES09132011	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:139072916 () rs orientation: forward

Symbol	Name	Function Class
Ccnd3-ps	cyclin D3, pseudogene	within coordinates
Cpgi15166	CpG island 15166	172 bp proximal
Gm70501	predicted gene, 70501	1254 bp downstream
Mrto4	mRNA turnover 4, ribosome maturation factor	1835 bp downstream
Rr603197	regulatory region 603197	1462 bp distal
Rr603198	regulatory region 603198	103 bp proximal
Tssr44225	transcription start site region 44225	390 bp downstream