rs27567994 SNP Detail

Summary

• ID
  rs27567994
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:139071779 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAAC CTTGTGGCCC GAGGAAAGAC
  Y
  TGTGGCCCTA GGGCTTGCCC TCTCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37764918	NES09132003	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27567994					SNP	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37764918	NES09132003	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:139071779 () rs orientation: forward

Symbol	Name	Function Class
Ccnd3-ps	cyclin D3, pseudogene	832 bp downstream
Cpgi15166	CpG island 15166	1309 bp proximal
Gm13019	predicted gene 13019	1135 bp downstream
Gm70501	predicted gene, 70501	117 bp downstream
Rr603197	regulatory region 603197	325 bp distal
Rr603198	regulatory region 603198	1240 bp proximal
Tssr44225	transcription start site region 44225	1527 bp downstream