rs27567996 SNP Detail

Summary

• ID
  rs27567996
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:139071082 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACCA TGCCCAGCTG ACCTTATTCT
  Y
  TTGAATGCCT GAGGCCTGCC CTTTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss37764920	NES09132031	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	T	T
ss321381206	CHEV_4_138899686	CHEVERUD	SCREENING_POP	f	SNP		T					T
SNP Consensus Information
SNP					Consensus Type	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs27567996					SNP	T	T	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37764920	NES09132031	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:139071082 () rs orientation: forward

Symbol	Name	Function Class
Ccnd3-ps	cyclin D3, pseudogene	1529 bp downstream
Gm13019	predicted gene 13019	438 bp downstream
Gm70501	predicted gene, 70501	within coordinates
Rr603196	regulatory region 603196	1881 bp distal
Rr603197	regulatory region 603197	4 bp proximal
Rr603198	regulatory region 603198	1937 bp proximal