rs27569562 SNP Detail

Summary

• ID
  rs27569562
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:124609583 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTTACTTA GCCCTGTGGT
  ACAAATTTGC TTCATTCTGA TGGCTTTGCG CTTCTGTTTC AGAGGTACAT GGAGGTCAGT
  GGGAACCTGA GGGATTTGTA TGATGATAAG GACGGGTAAG TGACGGTCAC ATCCCTTCTA
  ACAATTAGTG CTTTTGAGGA GCCCTGGTGA GACCATGGGC TGTGTGCTTT ATGCTCTTCG
  K
  GTTTGTTGAT ATCTTGCAGA CTGCGGAAGG AGGAGCTCAA TGCTATCTCA GGACCCAACG
  AGTTCGCTGA ATTCTATAAC AGACTCAAGC AGATAAAGGA ATTCCATCGG AAGCACCCAA
  ATGAGGTAAG GCCTCCCAAC TTAGTGTCCT TAGACCTGGC CGTTAACAAA AGGGAAAGAT
  GCAAAGGAAA TGGAGCTATG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37739309	NES09184002	PERLEGEN	MM_PANEL2	f	SNP	G	G	T	G	G	G	G	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27569562					SNP	G	G	T	G	G	G	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37739309	NES09184002	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:124609583 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14778	CpG island 14778			393 bp distal
Rr367691	regulatory region 367691			934 bp downstream
Rr599341	regulatory region 599341			1588 bp distal
Rr599342	regulatory region 599342			1004 bp distal
Rr599343	regulatory region 599343			1313 bp distal
Sf3a3	splicing factor 3a, subunit 3			Intron
				Noncoding-Transcript-Variant
Tssr38902	transcription start site region 38902			911 bp downstream