rs27569565 SNP Detail

Summary

• ID
  rs27569565
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:124609414 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAGCCCCT CTAGGGTACC
  TAATCAGATG TCCTATCTCT GCCTCCCAAG TGCTGGGATT AAAAGTGTAT GCAACCACCT
  CGGGATCAAG CTGTCTCTTA AAAGTGGTGG AACTTTGAAG ACCATGTATC TCATGAGTTT
  TCCTTGGGTT TTGCCAAGAC ATCCTTTCTT GTTTACTTAG CCCTGTGGTA CAAATTTGCT
  Y
  CATTCTGATG GCTTTGCGCT TCTGTTTCAG AGGTACATGG AGGTCAGTGG GAACCTGAGG
  GATTTGTATG ATGATAAGGA CGGGTAAGTG ACGGTCACAT CCCTTCTAAC AATTAGTGCT
  TTTGAGGAGC CCTGGTGAGA CCATGGGCTG TGTGCTTTAT GCTCTTCGGG TTTGTTGATA
  TCTTGCAGAC TGCGGAAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37739312	NES09183996	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27569565					SNP	T	T	C	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37739312	NES09183996	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:124609414 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14778	CpG island 14778			224 bp distal
Rr367691	regulatory region 367691			765 bp downstream
Rr599341	regulatory region 599341			1419 bp distal
Rr599342	regulatory region 599342			835 bp distal
Rr599343	regulatory region 599343			1144 bp distal
Sf3a3	splicing factor 3a, subunit 3			Intron
				Noncoding-Transcript-Variant
Tssr38902	transcription start site region 38902			742 bp downstream