rs27569567 SNP Detail

Summary

• ID
  rs27569567
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:124609225 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTAACAACG TATGTGTTAC
  CGTTTGCCTT TCTGCAGCTT CGGGACCAGA TCAATTCCGA TCACCGCACT CGGGCCATGC
  AAGATGTGAG TGCGCCGCCG TCCGCTTCCC CTGGGGTCGG GCTGGGCGGG AAAAGTGCAG
  GCTGGGAAGG TTGAGTGGCC CTGCGTGATT TCTACCCCTG AGTTCTTAGA CAAGCCCCTC
  W
  AGGGTACCTA ATCAGATGTC CTATCTCTGC CTCCCAAGTG CTGGGATTAA AAGTGTATGC
  AACCACCTCG GGATCAAGCT GTCTCTTAAA AGTGGTGGAA CTTTGAAGAC CATGTATCTC
  ATGAGTTTTC CTTGGGTTTT GCCAAGACAT CCTTTCTTGT TTACTTAGCC CTGTGGTACA
  AATTTGCTTC ATTCTGATGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37739314	NES09183994	PERLEGEN	MM_PANEL2	f	SNP	T	A	T	T	T	T	T	A		T	A		T
ss321294525	CHEV_4_124392676	CHEVERUD	SCREENING_POP	f	SNP									A			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27569567					SNP	T	A	T	T	T	T	T	A	A	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37739314	NES09183994	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:124609225 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14778	CpG island 14778			35 bp distal
Rr367691	regulatory region 367691			576 bp downstream
Rr599341	regulatory region 599341			1230 bp distal
Rr599342	regulatory region 599342			646 bp distal
Rr599343	regulatory region 599343			955 bp distal
Sf3a3	splicing factor 3a, subunit 3			Intron
				Noncoding-Transcript-Variant
Tssr38902	transcription start site region 38902			553 bp downstream