rs27571646 SNP Detail

Summary

• ID
  rs27571646
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:140844364 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCAGGTGA GTTCAAGGCC
  AGCCTGGTCT ACAGAGCAAG TTCCAGGTCA GCCAGGGCTA CAGAGAGAGA CCCTGTCTTG
  GGGAAAGAAT AGCCCGAGAA AGCCCTCCAA ACTCGAAGGC TGCAGTGTGC TCAGAGGCTG
  GCTGACTGAC CCAAGTGTGC AGTCCCCAAT ATTGGAGAGA AAAGAAAGAA GAGTCTATTG
  Y
  GGTGTGGCTG TAACCCTACC ACCAGAGAAG CTGAGGCAGG ACTGCTGGGC CAGCCTAGGA
  TACAGGGTGA AAGTGTCTCA GAACCCCAAG ATTATGGCTG GACGTGTGCC TGAGCACAGA
  GCTGCCAGCA TACAGGAAGC CCAGGTTTGG TTGCAGTTCT GGGTAGGGGA GGGGAGGACA
  GCTGTAAGCC CAGCAGACAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37786976	NES09130337	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27571646					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37786976	NES09130337	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140844364 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4921514A10Rik	RIKEN cDNA 4921514A10 gene			within coordinates
Rr603650	regulatory region 603650			1988 bp distal
Rr603651	regulatory region 603651			1383 bp distal
Szrd1	SUZ RNA binding domain containing 1			Intron
				Noncoding-Transcript-Variant
Tssr44297	transcription start site region 44297			1762 bp upstream
Tssr44298	transcription start site region 44298			1660 bp upstream
Tssr44299	transcription start site region 44299			1384 bp upstream