rs27571647 SNP Detail

Summary

• ID
  rs27571647
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:140843206 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGACCCAAC GGCTGTCTGA TCACATTGCT GGGCTGCCTG
  CTGTCTTCGG GTTGGGAGAT CCTGGTTGGC CTGGAGGAAG AGAGAAGGCA GGCCTTGAGG
  R
  TAGAAAAGCT GCCCAGATTC TTTAGTGTGG GACACGTGGG CGTAGGTGCA TGTGTGTGGC
  CGGAGACCGT CAGGTACATT CTCTATTCTC CACTTCCTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NZW/LacJ
ss37786977	NES09130466	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	G	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	MOLF/EiJ	NZW/LacJ
rs27571647					SNP	G	A	A	A	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37786977	NES09130466	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140843206 () rs orientation: forward

Symbol	Name	Function Class
4921514A10Rik	RIKEN cDNA 4921514A10 gene	within coordinates
Rr603650	regulatory region 603650	830 bp distal
Rr603651	regulatory region 603651	225 bp distal
Szrd1	SUZ RNA binding domain containing 1	within coordinates
Tssr44297	transcription start site region 44297	604 bp upstream
Tssr44298	transcription start site region 44298	502 bp upstream
Tssr44299	transcription start site region 44299	226 bp upstream